Recent Publications

Recent Journal Papers

T. E. Hameri; G. Fengos; M. Ataman; L. Miskovic; V. Hatzimanikatis : Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations; Metabolic Engineering. 2018-10-26. DOI : 10.1016/j.ymben.2018.10.005.
M. Tokic; N. Hadadi; M. Ataman; D. Neves; B. E. Ebert et al. : Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors; ACS Synthetic Biology. 2018-07-18. DOI : 10.1021/acssynbio.8b00049.
P. Salvy; G. Fengos; M. Ataman; T. Pathier; K. C. Soh et al. : pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis; Bioinformatics. 2018-07-02. DOI : 10.1093/bioinformatics/bty499.
S. Bulut; S. Siankevich; A. P. van Muyden; D. T. L. Alexander; G. Savoglidis et al. : Efficient cleavage of aryl ether C–O linkages by Rh–Ni and Ru–Ni nanoscale catalysts operating in water; Chemical Science. 2018. DOI : 10.1039/C8SC00742J.
L. C. Bryan; D. R. Weilandt; A. L. Bachmann; S. Kilic; C. C. Lechner et al. : Single-molecule kinetic analysis of HP1-chromatin binding reveals a dynamic network of histone modification and DNA interactions; Nucleic Acids Research. 2017. DOI : 10.1093/nar/gkx697.

Recent Conference Papers, Poster and Talks

P. G. R. Salvy : ETFL: A Formulation of ME-Models Accounting for Expression and Thermodynamics in Constraint-Based Models ; 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018), Seattle, WA, USA, October 14-16th 2018.
M. Tokic; L. Miskovic; V. Hatzimanikatis : Predicted responses of a large-scale Pseudomonas putida KT2440 kinetic metabolic model to several single-gene knockouts are consistent with experimental observations ; 5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.
M. Tokic; N. Hadadi; M. Ataman; D. Neves; B. E. Ebert et al. : Exploring Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors ; 5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.
L. Miskovic; J. Beal; M. Moret; V. Hatzimanikatis : Machine Learning for Uncertainty Reduction in Biochemical Kinetic Models ; 5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.
R. A. Denhardt-Eriksson; P. Sandoz; L. Gouzi Abrami; S. Ho; B. Kunz : Modeling CLiMP-63 spatio-temporal distribution and its interplay with Post-translational modification ; 5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, United States of America, October 14-16, 2018.