Conference Paper, Talks, Posters

2018

In silico tracing of the fate of single carbon atoms in different physiological states of E. coli

J. M. Hafner; B. Lopes; N. Hadadi

Metabolic Engineering 12, Munich, Germany, June 24-28, 2018.

Computational analysis of Pseudomonas Putida metabolism Using Large-scale Kinetic Models

M. Tokic; L. Miskovic; V. Hatzimanikatis

Metabolic Engineering 12, Munich, Germany, June 24-28, 2018.

Evaluating the similarity of biochemical reactions and its uses for mapping novel and orphan reactions to protein sequences

H. Mohammadi Peyhani

Metabolic Engineering 12, Munich, Germany, June 24-28, 2018.

2017

Toward the identification of cellular mechanisms behind the lethal phenotypes in malaria parasites blood stages with PlasmoGEM and metabolic modeling

A. Chiappino Pepe; E. Bushell; J. C. Rayner; O. Billker; V. Hatzimanikatis

Biochemical and Molecular Engineering XX, Newport Beach, CA, USA, July 16-20, 2017.

Identifying and targeting key cellular mechanisms for proliferation in Plasmodium parasites: a combined experimental and computational strategy

A. Chiappino Pepe; E. Bushell; R. Limenitakis; J. C. Rayner; V. Heussler et al.

3rd International SystemsX.ch Conference on Systems Biology, ETH Zurich, Zurich, Switzerland, September 4-7, 2017.

Facing The Unknown: Suggesting Alternative Novel Biochemistry in Escherichia coli and Saccharomyces cerevisiae

A. Chiappino Pepe; M. Ataman; N. Hadadi; V. Hatzimanikatis

253rd ACS National Meeting & Exposition, San Francisco, CA, USA, April 2-6, 2017.

Toward the identification of cellular mechanisms behind the lethal phenotypes in Plasmodium berghei blood stages with PlasmoGEM and metabolic modeling

A. Chiappino Pepe; E. Bushell; J. C. Rayner; O. Billker; V. Hatzimanikatis

BioMalPar XIII: Biology and Pathology of the Malaria Parasite, EMBL conference center, Heidelberg, Germany, May 29-31, 2017.

Toward fully characterized knowledge gaps in metabolic networks: discovery of missing biochemistry in Escherichia coli

A. Chiappino Pepe; M. Ataman; N. Hadadi; V. Hatzimanikatis

Biochemical and Molecular Engineering XX, Newport Beach, CA, USA, July 16-20, 2017.

Identifying and targeting key cellular mechanisms for proliferation in Plasmodium parasites: a combined experimental and computational strategy

A. Chiappino Pepe; E. Bushell; R. Limenitakis; J. C. Rayner; V. Heussler et al.

Gordon Research Conference: Malaria, Les Diableretes, Switzerland, July 2-7, 2017.

EXPLORING CHEMODIVERSITY IN METABOLISM TOWARDS THE SUPERVISED INTEGRATION OF CHEMISTRY INTO BIOLOGY

N. Hadadi; J. M. Hafner; H. Mohammadi Peyhani; V. Hatzimanikatis

3rd International SystemsX.ch Conference on system biology, Zurich,Switzerland, September 4-7, 2017.

Evaluating the similarity of biochemical reactions and its uses for mapping novel reactions to protein sequences

H. Mohammadi Peyhani; N. Hadadi; V. Hatzimanikatis

3rd International SystemsX.ch Conference on system biology, Zurich, Switzerland, September 4-7, 2017.

Fusing Individual-based Models with Genome-scale Metabolic Networks - a Novel Approach for Quantifying Emergent Microbial Community Spatiotemporal Dynamics

M. Ataman; B. Borer; D. Or; V. Hatzimanikatis

253rd ACS National Meeting & Exposition, San Francisco, CA, USA, April 2-6, 2017.

TOWARD THE IDENTIFICATION OF NEW CANCER THERAPY TARGETS USING METABOLIC MODELING IN A HUMAN GENOME SCALE

M. Masid; M. Ataman; G. Fengos; V. Hatzimanikatis

Biochemical and Molecular Engineering XX, Newport Beach, California, USA, July 16-20, 2017.

Generation and Analysis of Large-Scale Dynamic Non-Linear Models of Metabolism

G. Fengos; L. Miskovic; V. Hatzimanikatis

Biochemical and Molecular Engineering XX, Newport Beach, CA, USA, July 16-20, 2017.

Exploring chemodiversity in metabolism towards the selective integration of chemistry into biology

J. M. Hafner; N. Hadadi; V. Hatzimanikatis

Biochemical and Molecular Engineering XX, Newport Beach, California, USA, July 16-20, 2017.

Design of novel enzyme-catalyzed reactions linked to protein sequences for finding enzyme engineering targets

J. M. Hafner; H. Mohammadi Peyhani; N. Hadadi; V. Hatzimanikatis

Enzyme Engineering XXIV, Toulouse, France, September 24-28, 2017.

Discovery, evaluation, and analysis of novel pathways for production of five methyl ethyl ketone precursors

M. Tokic; N. Hadadi; M. Ataman; B. Ebert; L. Blank et al.

3rd International SystemsX.ch Conference, Zurich, Switzerland, September 4-7, 2017.

Optimization of the production of methyl ethyl ketone in recombinant Pseudomonas putida using large-scale kinetic models

M. Tokic; M. Ataman; L. Miskovic; V. Hatzimanikatis

Biochemical and Molecular Engineering XX, Newport Beach, CA, USA, July 16-20, 2017.

Discovery and evaluation of novel pathways for production of methyl ethyl ketone

M. Tokic; N. Hadadi; M. Ataman; B. Ebert; L. Blank et al.

Biochemical and Molecular Engineering XX, Newport Beach, CA, USA, July 16-20, 2017.

Identification of the enzymes that determine the robustness of lipid profiles in yeast

S. Tsouka; G. Savoglidis; H. Riezman; V. Hatzimanikatis

58th International Conference on the Bioscience of Lipids, Zurich, Switzerland, September 10-14, 2017.

A kinetic model of the lipid network in yeast

S. Tsouka; G. Savoglidis; V. Hatzimanikatis

3rd International SystemsX.ch Conference on Systems Biology, Zurich, Switzerland, September 4-7, 2017.

Unlocking the full potential of kinetic metabolic models through characterization and reduction of uncertainty

L. Miskovic; V. Hatzimanikatis

3rd International SystemsX.ch Conference on Systems Biology, Zurich, Switzerland, September 4-7, 2017.

Deciphering ambiguous control over fluxes through characterization and reduction of uncertainty

L. Miskovic; J. Béal; M. R. G. Moret; V. Hatzimanikatis

Biochemical & Molecular Engineering XX, Newport Beach, California, USA, July 16-20, 2017.

Understanding reprogramming of cancer cell metabolism using metabolic modeling

J. R. Pinto Vieira; M. Masid; V. Hatzimanikatis

7th LIMNA Symposium, CHUV, Lausanne, Switzerland, April 4, 2017.

2016

Analysis and Design of Metabolic Engineering and Synthetic Biology Strategies using Large Scale Dynamic Models of Metabolism

G. Fengos; L. Miskovic; V. Hatzimanikatis

Metabolic Engineering 11, Awaji Island, Japan, June 26-30, 2016.

“ATLAS of Biochemistry”: A repository of all possible biochemical reactions for synthetic biology, metabolic engineering and metabolomics studies

J. M. Hafner; N. Hadadi; A. Shajkofci; A. Zisaki; V. Hatzimanikatis

Metabolic Engineering 11, Awaji Island, Japan, June 26-30, 2016.

Large Scale Dynamic Models of Metabolism as a Tool for Analysis and Design of Metabolic Engineering and Synthetic Biology Strategies

G. Fengos; L. Miskovic; V. Hatzimanikatis

251st American Chemical Society National Meeting, San Diego, California, USA, March 13-17, 2016.

iSCHRUNK – In Silico Approach to Characterization and Reduction of Uncertainty in the Kinetic Models of Genome-scale Metabolic Networks

S. Andreozzi; L. Miskovic; V. Hatzimanikatis

251st American Chemical Society National Meeting, San Diego, California, USA, March 13-17, 2016.

Exploring enhancement of 1,4-butanediol production in recombinant E. coli using Large-scale kinetic models

S. Andreozzi; A. Chakrabarti; A. Burgard; T. H. Yang; S. Van Dien et al.

251st American Chemical Society National Meeting, San Diego, California, USA, March 13-17, 2016.

Discovery and Evaluation of Novel Pathways for Production of the Second Generation of Biofuels

M. Tokic; N. Hadadi; M. Ataman; L. Miskovic; D. Neves et al.

Metabolic Engineering XI, Awaji island, Japan, June 24-30, 2016.

Analysis and Design of Metabolic Engineering and Synthetic Biology Strategies using Large Scale Dynamic Models of Metabolism

G. Fengos; L. Miskovic; V. Hatzimanikatis

Metabolic Engineering XI, Awaji island, Japan, June 24-30, 2016.

How uncertainty in kinetic parameters affects metabolic control analysis of optimally grown E.coli

T. E. Hameri; G. Fengos; M. Ataman; L. Miskovic; V. Hatzimanikatis

Metabolic Engineering XI, Awaji island, Japan, June 24-30, 2016.

Identifying patterns in kinetic parameters that determine the impact of rate-limiting enzymes

L. Miskovic; M. R. G. Moret; V. Hatzimanikatis

Metabolic Engineering XI, Awaji island, Japan, June 24-30, 2016.

2015

Data Repository for Automated Metabolomics Administration (DRAMA)

J. R. Pinto Vieira; P. G. R. Salvy

Bioengineering Day 2015, SwissTech Convention Center, Lausanne, Switzerland, November 4, 2015.

Study on how underlying uncertainty in the flux values affects metabolic control analysis of optimally grown E. coli

T. E. Hameri; G. Fengos; M. Ataman; L. Miskovic

4th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2015), Heidelberg, Germany, September 16-18, 2015.

Developing a Reconciled Genome-Scale Model of the Malaria Parasite Plasmodium falciparum and its Thermodynamics-based Flux Balance Analysis

A. Chiappino Pepe; S. Tymoshenko; M. Ataman; D. Soldati-Favre; V. Hatzimanikatis

4th Conference on Constraint-Based Reconstruction and Analysis, Heidelberg, Germany, September 16-18, 2015.

Systematic Reduction of Genome Scale Metabolic Reconstructions - redGEM

M. Ataman; D. F. Hernandez Gardiol; G. Fengos; K. C. Soh; V. Hatzimanikatis

4th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2015), Crowne Plaza Heidelberg, Germany, September 16-18, 2015.

Integrating Transcriptomic Data with Thermodynamically Consistent Metabolic Models

D. F. Hernandez Gardiol; V. K. Pandey

4th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2015), Heidelberg, Germany, September 16-18, 2015.

A Study of Dynamic Responses of E. coli Metabolism Upon Large Perturbations Using Large-Scale Kinetic Models

M. Tokic; G. Fengos; L. Miskovic; V. Hatzimanikatis

4th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2015), Heidelberg, Germany, September 16-18, 2015.

Characterization of intracellular metabolic states in the origin of the metabolic reprogramming of cancer cells

J. R. Pinto Vieira; M. Ataman; V. Hatzimanikatis

Biochemical and Molecular Engineering XIX, Puerto Vallarta, Mexico, July 12-16, 2015.

In Silico Atom Labeling for the Reconstruction of Atom-mapped Metabolic Networks

N. Hadadi; J. Hafner; V. Hatzimanikatis

Biochemical and Biomolecular Engineering, Puerto Vallarta, Mexico, July 12-16, 2015.

Automated reconstruction of E-coli metabolic network from labeled metabolites

N. Hadadi; J. M. Hafner; V. Hatzimanikatis

Cell Factories and Biosustainability, Copenhagen, Denmark, May 17 – 21, 2015.

Systematic Reduction of Genome Scale Metabolic Reconstructions - redGEM

M. Ataman; D. F. Hernandez Gardiol; G. Fengos; K. C. Soh; V. Hatzimanikatis

Biomolecular Engineering 2015 Conference, Puerto Vallarta, Mexico, July 12-16 2015.

iSCHRUNK – in Silico Approach to Characterization and Reduction of Uncertainty in the Kinetic Models of Genome-scale Metabolic Networks

S. Andreozzi; L. Miskovic; V. Hatzimanikatis

Biochemical and Molecular Engineering XIX, Puerto Vallarta, Mexico, July 12-16, 2015.

Exploring enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models

S. Andreozzi; A. Chakrabarti; K. C. Soh; A. Burgard; T. H. Yang et al.

NovoNordisk Conference: Cell Factories and Biosustainability, Hillerød, Denmark, May, 17-21, 2015.

2014

Characterization of intracellular metabolic states in cells presenting the Warburg phenotype

J. R. Pinto Vieira; A. Kiparissides; V. Hatzimanikatis

Metabolic Engineering X Conference, Vancouver, BC, Canada, June 15-19, 20144.

Characterisation of intracellular metabolic states in cells presenting the Warburg phenotype

J. R. Pinto Vieira; A. Kiparissides; V. Hatzimanikatis

COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis, Wintergreen Resort, Charlottesville, VA, USA, May 20-23, 2014.

The design of “Super E. coli” through automated reaction network generation and genome scale models

N. Hadadi; A. Ataman; K. C. Soh; V. Hatzimanikatis

Metabolic Engineering X Conference, Vancouver, Canada, June14-19, 2014.

Protein synthesis - computational modeling and experimental integration

J. Racle; V. Hatzimanikatis

LS2 Annual Meeting 2014, Lausanne, Switzerland, February 4-5, 2014.

Deciphering thermodynamics in metabolic networks: A priority list of candidates for metabolomics

A. Kiparissides; V. Hatzimanikatis

Metabolic Engineering X, Vancouver, BC, Canada, June 15-19, 2014.

Towards a kinetic model of the phospholipids biosynthesis of the yeast Saccharomyces cerevisiae

I. Oikonomidi; G. Savoglidis; M. Ataman; V. Hatzimanikatis

LS2 Annual Meeting 2014, Lausanne, Vaud, Switzerland, February 4-5, 2014.

Kinetic reconstruction and analysis of sphingolipid metabolism

G. Savoglidis; I. Riezman; A. X. Santos; H. Riezman; V. Hatzimanikatis

2nd International SystemsX Conference, Lausanne, Vaud, Switzerland, October 20-23, 2014.

Kinetic reconstruction and analysis of sphingolipid metabolism

G. Savoglidis; I. Riezman; A. X. Santos; H. Riezman; V. Hatzimanikatis

Metabolic Engineering X Conference, Vancouver, British Columbia, Canada, June 15-19, 2014.

A Novel Approach to Design of Metabolic Engineering Strategiesa

A. Chakrabarti; G. Fengos; M. Ataman; K. C. Soh; L. Miskovic et al.

Metabolic Engineering X, Vancouver, Canada, June 15-19, 2014.

Implications of the Assumptions on Intracellular Metabolic Operational States in Metabolic Control Analysis

G. Fengos; A. Chakrabarti; K. C. Soh; L. Miskovic; V. Hatzimanikatis

Metabolic Engineering X, Vancouver, Canada, June 15-19, 2014.

Unraveling the inhibitory effects of acetate on ethanol production in CEN.PK

A. Chakrabarti; K. C. Soh; A. Kiparissides; H. van Rijsewijk; R. B. Bart et al.

Metabolic Engineering X, Vancouver, Canada, June 15-19, 2014.

Engineering improved productivity of 1,4-butanediol in E. coli – a kinetic modeling approach

S. Andreozzi; A. Chakrabarti; K. C. Soh; A. Burgard; S. Van Dien et al.

Metabolic Engineering X, Vancouver, Canada, June 15-19, 2014.

2013

Computational analysis of the interplay between tRNA competitive behavior and decoding type on the modulation of translation elongation rate

J. R. Pinto Vieira; J. Racle; V. Hatzimanikatis

ICSB 2013 - 14th International Conference on Systems Biology, Copenhagen, Denmark, August 30th - September 3rd, 2013.

Analysis of the dynamics and competition for resources in the system of protein translation using stochastic simulations

J. Pinto Vieira; J. Racle; V. Hatzimanikatis

9th European Biophysics Congress, Lisbon. Portugal, July 13-17, 2013.

Thermodynamics-Based Significance Ranking of Candidates for Metabolomics

A. Kiparissides; V. Hatzimanikatis

2013 AIChE Annual Meeting, San Francisco, CA, USA, November 3-8, 2013.

Unlocking Yeast Metabolism: Identification of optimal flux directionalities

A. Kiparissides; K. C. Soh; A. Chakrabarti; L. Miskovic; V. Hatzimanikatis

2013 AIChE Annual Meeting, San Francisco, CA, USA, November 3-8, 2013.

Thermodynamics-based Significance Ranking of Candidates for Metabolomics

A. Kiparissides; V. Hatzimanikatis

Biochemical and Molecular Engineering XVIII – Frontiers in Biological Design, Synthetic Biology and Processing: East Meets West, Beijing, June 16-20,2013.

A comprehensive reconstruction of the fatty acid biosynthesis in Saccharomyces cerevisiae

I. Oikonomidi; G. Savoglidis; V. Hatzimanikatis

All SystemsX.ch Day 2013, Bern, Switzerland, May 13, 2013.

Integrating omics data into metabolic models of lipids: a platform for the identification of gene mutations from lipidomics data

G. Savoglidis; P. Angelino; H. Riezman; V. Hatzimanikatis

2013 AIChE Annual Meeting, San Fransisco, California, USA, November 3-8, 2013.

In silico analysis of the interplay between P/O ratio and physiological states of the optimally grown Escherichia coli

M. Ataman; S. Andreozzi; K. C. Soh; L. Miskovic

ICSB 2013, Copenhagen, Denmark, 29 August - 4 September 2013.

The interplay between tRNA competition and decoding on mRNA translation elongation rate modulation

J. R. Pinto Vieira; J. Racle; V. Hatzimanikatis

2013. 9th European-Biophysical-Societies-Association Congress . p. S75-S75.

Identification of Feasible Metabolic Fluxes and Metabolite Concentrations using Large-scale Kinetic Models

A. Chakrabarti; L. Miskovic; K. C. Soh; V. Hatzimanikatis

Biochemical and Molecular Engineering XVIII, Beijing, China, June 16-20, 2013.

Data, Parameters & Nonlinearities: Development and Applications of Large-scale Dynamic Models of Metabolism

A. Chakrabarti; L. Miskovic; K. C. Soh; V. Hatzimanikatis

Biochemical and Molecular Engineering XVIII, Beijing, China, June 16-20, 2013.

Investigation of network flexibility and identification of reaction essentiality of human host cells infected by S. flexneri

A. Chakrabarti; L. Miskovic; K. C. Soh; V. Hatzimanikatis

Systems Biology of Infection, Monte Verità, Switzerland, June 23 - 27, 2013.

2012

Kinetic modeling of the yeast sphingolipid metabolism identifies prevalent mutant strains through integration of lipidomic data profiles

G. Savoglidis; P. Angelino; H. Riezman; V. Hatzimanikatis

Foundations of Systems Biology in Engineering 2012, Tsuruoka, Japan, October 21-25, 2012.

A novel approach to find the missing links in genome-scale metabolic models: The BridgeIt mrthod

M. Seijo; K. C. Soh; V. Hatzimanikatis

FOSBE 2012, Tsuruoka, Japan, October 21-25 2012.

Large-scale dynamic models of metabolic networks

A. Chakrabarti; K. C. Soh; L. Miskovic; V. Hatzimanikatis

FOSBE 2012 conference, Tsuruoka, Japan, October 21-25, 2012.

Systematic Metabolic Engineering of Recombinant Xylose-Utilizing S. cerevisiae: Strategies for Improving Xylose Uptake Rate

L. Miskovic; D. Bart; K. C. Soh; S. Alff-Tuomala; L. Salusjarvi et al.

FOSBE 2012 conference, Tsuruoka, Japan, October 21-25, 2012.

Systematic characterization of flux and network thermodynamic states for identification of metabolic engineering targets

K. C. Soh; L. Miskovic; V. Hatzimanikatis

Metabolic Engineering IX, Biarritz, France, June 03-07, 2012.

Metabolic control analysis of the central carbon pathway in optimally grown E. coli

S. Andreozzi; L. Miskovic; K. C. Soh; V. Hatzimanikatis

Metabolic Engineering IX, Biarritz, France, June 03-07, 2012.

2011

Stochastic noise in translation

J. Racle; A. Stefaniuk; V. Hatzimanikatis

12th International Conference on Systems Biology, Heidelberg/Mannheim, Germany, August 28-September1, 2011.

Stochastic noise in translation

A. Stefaniuk; J. Racle; V. Hatzimanikatis

Gordon Research Conference on Stochastic Physics in Biology, Ventura, USA, January 23-28, 2011.

2010

Deciphering Translation - a Genome-Wide Analysis of Translation Limitations and Competitions in Saccharomyces cerevisiae

J. Racle; A. Mehra; V. Hatzimanikatis

2010 AIChE Annual Meeting, Salt Lake City, Utah, USA, November 7-12, 2010.

Deciphering translation - a genome-wide analysis of translation in Escherichia coli

J. Racle; V. Hatzimanikatis

11th International Conference on Systems Biology, Edinburgh, UK, October 10-16, 2010.

Improving Ethanol Production of Xylose-Utilizing Saccharomyces cerevisiae

L. Miskovic; V. Hatzimanikatis

2010 AIChE Annual Meeting, Salt Lake City, UT, November 7-12, 2010.

Kinetic modeling of the central carbon metabolism of Escherichia Coli

L. Miskovic; V. Hatzimanikatis

2010 AIChE Annual Meeting, Salt Lake City, UT , November 7-12, 2010.

Exploration of Signaling Cycles using Dynamic Optimization

A. Radivojevic; B. Chachuat; D. Bonvin; V. Hatzimanikatis

AIChE Annual Meeting, Salt Lake City, UT, USA, November 7-12, 2010.

Exploration of signaling cycles using dynamic optimization

A. Radivojevic; B. Chachuat; D. Bonvin; V. Hatzimanikatis

11th International Conference on Systems Biology, Edinburgh, Scotland, UK., October 11-14, 2010.

Computational Analysis of Xylose-Utilizing Saccharomyces cerevisiae

L. Miskovic; V. Hatzimanikatis

Metabolic Engineering VIII: Metabolic Engineering for Green Growth, Jeju Island, South Korea, June 13-17, 2010.

Quantitative Analysis of Metabolic Networks Through the Explicit Consideration of Kinetic Mechanisms

L. Miskovic; V. Hatzimanikatis

Metabolic Engineering VIII: Metabolic Engineering for Green Growth , Jeju Island, South Korea, June 13-17, 2010.

2009

BIOT 57-Network-based optimization of protein production

J. Overney; H. Zouridis; V. Hatzimanikatis

2009. p. -.

BIOT 329-Analysis of genome-scale metabolic model of mycobacterium tuberculosis for new combat strategies

M. E. Oezdemir; K. C. Soh; J. D. McKinney; V. Hatzimanikatis

2009. p. -.

BIOT 428-Optimization of ethanol production from xylose in Saccharomyces cerevisiae

V. Hatzimanikatis; L. Miskovic

2009.

BIOT 375-Analysis and synthesis of novel metabolic pathways

E. C. Brunk; M. Neri; U. Roethlisberger; V. Hatzimanikatis

2009. p. -.

Quantification of uncertainty in metabolic networks through the sampling of kinetic data space

L. Miskovic; V. Hatzimanikatis

2009. Fosbe2009 , Denver, Colorado , August 9-12, 2009.

2008

Enzyme States Allow Identification of Rate-Limiting Steps

L. Miskovic; V. Hatzimanikatis

Metabolic Engineering VII: Health and Sustainability, Puerto Vallarta, Mexico, September 14-19, 2008.

Study of Tricyclic Cascade Networks using Dynamic Optimization

A. Radivojevic; B. Chachuat; D. Bonvin; V. Hatzimanikatis

AIChE Annual Meeting, Philadelphia, PA, November 16-21 2008.

Identification of the Design Principles of Signaling Pathways for Metabolic Engineering

A. Radivojevic; B. Chachuat; D. Bonvin; V. Hatzimanikatis

Metabolic Engineering VII: Health and Sustainability , Puerto Vallarta, Mexico, September 14-19, 2008.

2007

Understanding the Optimal Response Properties of Tricyclic Cascade Networks through Dynamic Optimization

B. Chachuat; D. Bonvin; V. Hatzimanikatis

AIChE Annual Meeting, Salt Lake City, UT, November 4-9, 2007.

2005

Analysis of yeast metabolism using metabolic control analysis under uncertainty

L. Wang; V. Hatzimanikatis

2005. p. BIOT-287.

Bistability of protein aggregation as a function of molecular chaperone concentration

T. R. Rieger; R. I. Morimoto; V. Hatzimanikatis

2005. p. BIOT-326.

From single module to signaling cascade networks: Network performance of ultrasensitive modules

T. R. Rieger; V. Hatzimanikatis

2005. p. BIOT-419.

Systems-wide mathematical and computational framework for translation: Insights into regulation of protein expression in S. cerevisiae

A. Mehra; V. Hatzimanikatis

2005. p. BIOT-420.

Analysis of free energy change and thermodynamic feasibility in a genome scale metabolic model

C. S. Henry; M. Jankowski; L. J. Broadbelt; V. Hatzimanikatis

2005. p. BIOT-095.

Exploring the diversity of metabolism

V. Hatzimanikatis; C. Li; J. A. Ionita; C. S. Henry; M. Jankowski et al.

2005. p. BTEC-019.

2003

A computational framework for the discovery of novel biotransformations

V. Hatzimanikatis; C. Li; J. A. Ionita; L. J. Broadbelt

2003. p. BIOT-111.

Quantification and characterization of uncertainty in metabolic engineering

V. Hatzimanikatis; I. Birol; J. Shi; L. Wang

2003. p. BIOT-169.

2000

Mathematical framework for correlating mRNA and protein expression profiles

V. Hatzimanikatis; J. Kolstad; K. H. Lee

2000. p. BIOT-296.

1997

Metabolic fluxes in central carbon metabolism of Bacillus subtilis

U. Sauer; V. Hatzimanikatis; T. Szyperski; K. Wuthrich; J. E. Bailey

1997. p. BIOC-051.